
Stochastic diffusion segments of dendrits with spines. 

Each subpackage has its own ABOUT file. 
The problem is broken down as:

model - classes to represent the input data for reaction schemes morphology etc
              these mirror the file formats used for the input, and are instantiated as the 
              files are read. 
              They then typically have a a resolve method to dereference the input back to 
              a proper linked object tree and a method to re-export the data in a format 
              more suitable for calculations.
              
disc - discretization of morphologies: turning the structure as specified in the input files into 
         a grid of volume elements and the coupling constants between them
         
geom - various bits of geometry used in the discretization process - Points, Vectors, Translations
            and Rotations
            
 inter - things to do with reading models - should go elsewhere in the end
 
numeric - numerical methods for reaction and diffusion systems. There are a varity of methods
                included as well as the final stochastic diffusion method to provide cross-checks and 
                measure accuracy etc.
                The methods are broken down into subpackages - see the about file...
                
phys - A whole package for Avagadro's number... maybe not called for, unless we find more 
           stuff that goes in here
   