sls 8/9/2000 Tests of Purkinje design (NOTE: somata are poorly done) av purktest_new -R 10 GIORGIO: ( command for writing this out is: CTRL-t to get write option, and then type @seg ) ( the @ sign tells the writing routine to split into single files; and gives special colors ) ( %seg also splits, but retains absolute segment numbers and xyz soma coordinates ) Opening 'purk10@seg' Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #1 Zapped the voided FILE using the cmd: 'rm /disk3/AV_june_2000/cell_types_for_papers/purk10@seg' mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e1.seg' Extending LUCIDA from [0 to 1000) (Lim 0) Cell[ 1, 1] has 672 pts ( 48 vees; 49 ends; net len: 471.246651 mu; sfa: 2523.040253 mu2; vol: 3939.450640 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e2.seg' Cell[ 1, 2] has 4131 pts ( 343 vees; 344 ends; net len: 2767.998937 mu; sfa: 10183.164919 mu2; vol: 4802.906756 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e3.seg' Cell[ 1, 3] has 2994 pts ( 237 vees; 238 ends; net len: 2030.575166 mu; sfa: 7663.328473 mu2; vol: 4905.594706 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e4.seg' Cell[ 1, 4] has 18198 pts (1356 vees; 1357 ends; net len: 12256.689551 mu; sfa: 42752.743755 mu2; vol: 17427.002709 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e5.seg' Cell[ 1, 5] has 6788 pts ( 517 vees; 518 ends; net len: 4583.804926 mu; sfa: 16850.817543 mu2; vol: 11118.364776 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e6.seg' Cell[ 1, 6] has 4459 pts ( 331 vees; 332 ends; net len: 2987.657757 mu; sfa: 11079.730816 mu2; vol: 5080.046034 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e7.seg' Cell[ 1, 7] has 5044 pts ( 409 vees; 410 ends; net len: 3373.185110 mu; sfa: 12029.612729 mu2; vol: 5041.505923 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e8.seg' Cell[ 1, 8] has 11185 pts ( 848 vees; 849 ends; net len: 7508.881536 mu; sfa: 26827.678386 mu2; vol: 16191.133995 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e9.seg' Cell[ 1, 9] has 1362 pts ( 100 vees; 101 ends; net len: 939.332680 mu; sfa: 4574.592915 mu2; vol: 5534.737591 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk10/purk10_g1_e10.seg' Cell[ 1, 10] has 5126 pts ( 378 vees; 379 ends; net len: 3476.549030 mu; sfa: 12975.825685 mu2; vol: 7706.107494 mu3) Writing RAW data, group 2/6 [ 1939] Purkinje Dendrites I ... pass #1 Writing RAW data, group 3/6 [29222] Purkinje Dendrites II ... pass #1 Writing RAW data, group 4/6 [28790] Purkinje Dendrites III ... pass #1 Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #2 Writing RAW data, group 2/6 [ 1939] Purkinje Dendrites I ... pass #2 Writing RAW data, group 3/6 [29222] Purkinje Dendrites II ... pass #2 Writing RAW data, group 4/6 [28790] Purkinje Dendrites III ... pass #2 (problem of even distributions ...) av purktest_new -R 20 -> some too-stubby cells ... av purktest_new -R 30 Opening 'purk30@seg' Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #1 Zapped the voided FILE using the cmd: 'rm /disk3/AV_june_2000/cell_types_for_papers/purk30@seg' mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e1.seg' Extending LUCIDA from [0 to 1000) (Lim 0) Cell[ 1, 1] has 3263 pts ( 257 vees; 258 ends; net len: 2188.645395 mu; sfa: 8799.938393 mu2; vol: 6580.867704 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e2.seg' Cell[ 1, 2] has 2834 pts ( 211 vees; 212 ends; net len: 1964.722763 mu; sfa: 8394.397149 mu2; vol: 6441.254095 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e3.seg' Cell[ 1, 3] has 11841 pts ( 883 vees; 884 ends; net len: 7975.508640 mu; sfa: 28077.966439 mu2; vol: 11538.202912 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e4.seg' Cell[ 1, 4] has 2198 pts ( 164 vees; 165 ends; net len: 1493.308745 mu; sfa: 6194.186767 mu2; vol: 6266.991719 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e5.seg' Cell[ 1, 5] has 7011 pts ( 519 vees; 520 ends; net len: 4711.477449 mu; sfa: 15142.452525 mu2; vol: 6124.065818 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e6.seg' Cell[ 1, 6] has 12916 pts ( 967 vees; 968 ends; net len: 8664.778724 mu; sfa: 31189.853873 mu2; vol: 14056.048758 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e7.seg' Cell[ 1, 7] has 2724 pts ( 197 vees; 198 ends; net len: 1857.805957 mu; sfa: 8212.572310 mu2; vol: 13222.139280 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e8.seg' Cell[ 1, 8] has 5608 pts ( 436 vees; 437 ends; net len: 3749.711463 mu; sfa: 14289.740171 mu2; vol: 7922.939849 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e9.seg' Cell[ 1, 9] has 4291 pts ( 302 vees; 303 ends; net len: 2888.985766 mu; sfa: 10476.112311 mu2; vol: 4683.171610 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk30/purk30_g1_e10.seg' Cell[ 1, 10] has 7657 pts ( 593 vees; 594 ends; net len: 5165.439038 mu; sfa: 18759.790455 mu2; vol: 11382.994062 mu3) Writing RAW data, group 2/6 [ 1950] Purkinje Dendrites I ... pass #1 Writing RAW data, group 3/6 [28757] Purkinje Dendrites II ... pass #1 Writing RAW data, group 4/6 [29628] Purkinje Dendrites III ... pass #1 Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #2 Writing RAW data, group 2/6 [ 1950] Purkinje Dendrites I ... pass #2 Writing RAW data, group 3/6 [28757] Purkinje Dendrites II ... pass #2 Writing RAW data, group 4/6 [29628] Purkinje Dendrites III ... pass #2 av purktest_new -R 40 (this is the most pleasing set) Opening 'purk40@seg' Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #1 Zapped the voided FILE using the cmd: 'rm /disk3/AV_june_2000/cell_types_for_papers/purk40@seg' mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e1.seg' Extending LUCIDA from [0 to 1000) (Lim 0) Cell[ 1, 1] has 5866 pts ( 463 vees; 464 ends; net len: 3936.733554 mu; sfa: 14800.075198 mu2; vol: 7227.439205 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e2.seg' Cell[ 1, 2] has 1477 pts ( 113 vees; 114 ends; net len: 1013.223239 mu; sfa: 4580.031925 mu2; vol: 4498.591633 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e3.seg' Cell[ 1, 3] has 12598 pts ( 954 vees; 955 ends; net len: 8443.543448 mu; sfa: 31293.240743 mu2; vol: 18291.060194 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e4.seg' Cell[ 1, 4] has 8141 pts ( 592 vees; 593 ends; net len: 5480.159530 mu; sfa: 20327.545248 mu2; vol: 13945.504650 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e5.seg' Cell[ 1, 5] has 4439 pts ( 328 vees; 329 ends; net len: 2997.729439 mu; sfa: 11521.928972 mu2; vol: 7949.929319 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e6.seg' Cell[ 1, 6] has 3144 pts ( 253 vees; 254 ends; net len: 2137.485227 mu; sfa: 8816.289336 mu2; vol: 8370.804044 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e7.seg' Cell[ 1, 7] has 4188 pts ( 325 vees; 326 ends; net len: 2834.304620 mu; sfa: 10685.443559 mu2; vol: 9252.683123 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e8.seg' Cell[ 1, 8] has 11568 pts ( 873 vees; 874 ends; net len: 7774.350858 mu; sfa: 27648.648161 mu2; vol: 13727.798725 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e9.seg' Cell[ 1, 9] has 6028 pts ( 450 vees; 451 ends; net len: 4025.149250 mu; sfa: 15141.989296 mu2; vol: 11256.181083 mu3) mirv_fp = 5 for '/disk3/AV_june_2000/cell_types_for_papers/purk40/purk40_g1_e10.seg' Cell[ 1, 10] has 3209 pts ( 235 vees; 236 ends; net len: 2197.699021 mu; sfa: 9386.106779 mu2; vol: 6708.379781 mu3) Writing RAW data, group 2/6 [ 1939] Purkinje Dendrites I ... pass #1 Writing RAW data, group 3/6 [30332] Purkinje Dendrites II ... pass #1 Writing RAW data, group 4/6 [28379] Purkinje Dendrites III ... pass #1 Writing RAW data, group 1/6 [ 10] Purkinje Somata ... pass #2 Writing RAW data, group 2/6 [ 1939] Purkinje Dendrites I ... pass #2 Writing RAW data, group 3/6 [30332] Purkinje Dendrites II ... pass #2 Writing RAW data, group 4/6 [28379] Purkinje Dendrites III ... pass #2