# puhi.prm - new version (started 7/4/00) by GAA # Edited (five times) on 7/12/2000 (see diary.txt) # to be used in the production of virtual neurons # for online database and A&E paper # Parameters "measured" with hm.awk # from data by Rapp (converted with nts2swc.awk) # run with lneuron -H -T -s 11 puhi.prm # -T outputs swc (without goes vol) # -s is the seed (try also 12, ...) 1 somadiam k 10 3 bifamplitude g 71 40 1 179 # measured (min and max eyeballed) 3 biforient g 0.0 13.5 # mytropism 3 bifpower g 1.5 0.8 0.75 4.8 # measured (see &@& in diary.txt) 3 bifratio g 1.18 0.68 1 # measured 3 conslength g 9.5 5.7 0.5 44 # measured (see note &*& in diary.txt) 3 initdiam m 2 3 initdiam g 0.75 6.167 1.069 4.8 7.6 # (see &#& in diary.txt, 7/12/2000) 3 initdiam u 0.25 5.5 7.4 3 termlength k 0.1 # (~zero) hm.pad returns termlength smaller than conslength! 3 threshold m 2 3 threshold u 0.103 1.5 2.2 3 threshold g 0.897 1.02 0.269 0.3 2.7 3 taper m 3 # measured 3 taper k 0.791 0 3 taper g 0.072 -0.17 0.19 -1.8 0 3 taper u 0.137 0.05 0.4 3 numtree k 1 # checked 3 treeazim k 0 # defined 3 treeelev k 0 # defined 3 contraction m 2 3 contraction k 0.532 1 3 contraction g 0.468 1.1 0.1 0.3 0.99 3 fragmentation g 0 1.56 0.39