Last update: November 24, 2005
Present content (SWC format): 542 cells
Traced Neurons:
Amaral
Cell archive
Neuron_Morpho
reconstructions
Mouse Alpha Motoneurons
Generated Neurons:
Motoneurons
Purkinje
Cells
Hippocampal
Pyramidal Cells
LINKS, ACKNOWLEDGMENTS, AND
REFERENCES
Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
c31162 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 31162.JPG | c31162.txtd.swc | c31162.txt |
c30573 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 30573.JPG | c30573.txtd.swc | c30573.txt |
c20467 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 20467.JPG | c20467.txtd.swc | c20467.txt |
c12979 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12979.JPG | c12979.txtd.swc | c12979.txt |
c12973 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12973.JPG | c12973.txtd.swc | c12973.txt |
c12971 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12971.JPG | c12971.txtd.swc | c12971.txt |
c12877 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12877.jpg | c12877.txtd.swc | c12877.txt |
c12873 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12873.jpg | c12873.txtd.swc | c12873.txt |
c12866 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 12866.jpg | c12866.txtd.swc | c12866.txt |
c11571 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 11471.jpg | c11571.txtd.swc | c11571.txt |
c11471 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 11471.jpg | c11471.txtd.swc | c11471.txt |
c10861 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | 10861.JPG | c10861.txt.swc | c10861.txt |
c82063 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c82063.txtd.swc | c82063.txt | |
c82061 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c82061.txtd.swc | c82061.txt | |
c81463 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c81463.txtd.swc | c81463.txt | |
80764 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c80764.txtd.swc | c80764.txt | |
c73167b | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c73167b.txtd.swc | c73167b.txt | |
c73104 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c73164.txtd.swc | c73164.txt | |
c62563 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c62563.txtd.swc | c62563.txt | |
c60463 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c60463.txtd.swc | c60463.txt | |
c60361 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c60361.txtd.swc | c60361.txt | |
c53063 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c53063.txtd.swc | c53063.txt | |
c40165 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c40165.txtd.swc | c40165.txt | |
c31164 | Hippocampal Ca3 | Experimental | AmaralCa3.txt | c31164.txtd.swc | c31164.txt | |
cd2351 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | cd2351.txtd.swc | ||
cd1152 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | cd1152.txtd.swc | ||
cd0351 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | cd0351.txtd.swc | ||
c9236e | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c9236e.txtd.swc | ||
c91665 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c91665.txtd.swc | ||
c91662 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c91662.txtd.swc | ||
c81462 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c81462.txtd.swc | ||
c8076e | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c8076e.txtd.swc | ||
c80761 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c80761.txtd.swc | ||
c73166b | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c73166b.txtd.swc | ||
c73166a | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c73166a.txtd.swc | ||
c73162 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c73162.txtd.swc | ||
c72965 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c72965.txtd.swc | ||
c70963 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c70963.txtd.swc | ||
c70963 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c70863.txtd.swc | ||
c70863 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c62564.txtd.swc | ||
c30465 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c30465.txtd.swc | ||
c20466 | Hippocampal Ca1 | Experimental | AmaralCa1.txt | c20466.txtd.swc | ||
Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
cell a | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_a.swc | |
cell b | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_b.swc | |
cell c | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_c.swc | |
cell d | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_d.swc | |
cell e | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_e.swc | |
cell f | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_f.swc | |
cell g | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_g.swc | |
cell h | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_h.swc | |
cell i | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_i.swc | |
cell j | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_j.swc | |
cell k | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_k.swc | |
cell l | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_l.swc | |
cell m | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_m.swc | |
cell n | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_n.swc | |
cell o | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_o.swc | |
cell p | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_p.swc | |
cell q | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_q.swc | |
cell r | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_r.swc | |
cell s | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_s.swc | |
cell t | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_t.swc | |
cell u | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_u.swc | |
cell v | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_v.swc | |
cell w | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_w.swc | |
cell x | Hippocampal Ca3 | Samsonovich 3-d | Samsonovich3D.htm | fig5a.bmp | cell_x.swc | |
Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
dend1 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend1.swc | edited.prm | |
dend2 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend2.swc | edited.prm | |
dend3 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend3.swc | edited.prm | |
dend4 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend4.swc | edited.prm | |
dend5 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend5.swc | edited.prm | |
dend6 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend6.swc | edited.prm | |
dend7 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend7.swc | edited.prm | |
dend8 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend8.swc | edited.prm | |
dend9 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend9.swc | edited.prm | |
dend10 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend10.swc | edited.prm | |
dend11 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend11.swc | edited.prm | |
dend12 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend12.swc | edited.prm | |
dend13 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend13.swc | edited.prm | |
dend14 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend14.swc | edited.prm | |
dend15 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend15.swc | edited.prm | |
dend16 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend16.swc | edited.prm | |
dend17 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend17.swc | edited.prm | |
dend18 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend18.swc | edited.prm | |
dend19 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend19.swc | edited.prm | |
dend20 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend20.swc | edited.prm | |
dend21 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend21.swc | edited.prm | |
dend22 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend22.swc | edited.prm | |
dend23 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend23.swc | edited.prm | |
dend24 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend24.swc | edited.prm | |
dend25 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend25.swc | edited.prm | |
dend26 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend26.swc | edited.prm | |
dend27 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend27.swc | edited.prm | |
dend28 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend28.swc | edited.prm | |
dend29 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend29.swc | edited.prm | |
dend30 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend30.swc | edited.prm | |
dend31 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend31.swc | edited.prm | |
dend32 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend32.swc | edited.prm | |
dend33 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend33.swc | edited.prm | |
dend34 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend34.swc | edited.prm | |
dend35 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend35.swc | edited.prm | |
dend36 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend36.swc | edited.prm | |
dend37 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend37.swc | edited.prm | |
dend38 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend38.swc | edited.prm | |
dend39 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend39.swc | edited.prm | |
dend40 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend40.swc | edited.prm | |
dend41 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend41.swc | edited.prm | |
dend42 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend42.swc | edited.prm | |
dend43 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend43.swc | edited.prm | |
dend44 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend44.swc | edited.prm | |
dend45 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend45.swc | edited.prm | |
dend46 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend46.swc | edited.prm | |
dend47 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend47.swc | edited.prm | |
dend48 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend48.swc | edited.prm | |
dend50 | Hippocampal Ca1 | Hillman | Dendrograms.txt | dend50.swc | edited.prm | |
Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
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v_h_moto1to60.txt |
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v_h_moto1to60.txt |
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v_h_moto1to60.prm |
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v_h_moto1to60.txt |
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v_h_moto1to60.prm |
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v_h_moto1to60.txt |
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v_h_moto1to60.prm |
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v_h_moto1to60.txt |
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v_h_moto1to60.prm |
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v_h_moto1to60.txt |
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v_h_moto7.jpg |
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v_h_moto8.jpg |
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v_h_moto9.jpg |
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v_hp_moto1.prm |
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v_tp_moto1.prm |
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Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
CA1a | CA1 | Scorcioni and Ascoli (Neurocomputing 2005) | ca1a.png | ca1a.swc | ||
CA1b | CA1 | Scorcioni and Ascoli (Neurocomputing 2005) | ca1b.png | ca1b.swc | ||
CA1c | CA1 | Scorcioni and Ascoli (Neurocomputing 2005) | ca1c.png | ca1c.swc | ||
CA2 | CA2 | Scorcioni and Ascoli (Neurocomputing 2005) | ca2.png | ca2.swc | ||
CA3b | CA3 | Scorcioni and Ascoli (Neurocomputing 2005) | ca3b.png | ca3b.swc | ||
Entho | spiny stellate cell | Scorcioni and Ascoli (Neurocomputing 2005) | entho.png | entho.swc | ||
Sub | subiculum neuron | Scorcioni and Ascoli (Neurocomputing 2005) | sub.png | sub.swc | ||
GC | granule cell | Scorcioni and Ascoli (Neurocomputing 2005) | gc.png | gc.swc |
Entry name |
Neuron type |
Algorithm |
Comment file |
Picture |
SWC file |
Other files |
NM1 |
CA1 |
Experimental |
|
|
|
|
NM2 |
CA1 |
Experimental |
|
|
|
|
NMA |
Cerebellar climbing fiber |
Experimental |
|
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|
NMB |
Cerebellar climbing fiber |
Experimental |
|
|
|
Entry name | Neuron type | Algorithm | Comment file | Picture | SWC file | Other files |
MMN1 | Alpha Motoneuron (P11) |
Experimental | Li et al. 2005 | ok_m79_diana.CNG.swc | ||
MMN2 |
Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m88mod.CNG.swc | ||
MMN3 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m97mod2.CNG.swc | ||
MMN4 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m116mod.CNG.swc | ||
MMN5 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m187mod.CNG.swc | ||
MMN6 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m191mod.CNG.swc |
||
MMN7 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m207amod.CNG.swc |
||
MMN8 | Alpha Motoneuron (P11) | Experimental | Li et al. 2005 | ok_m207b.CNG.swc |
||
MMN9 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m85mod.CNG.swc |
||
MMN10 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m135mod.CNG.swc |
||
MMN11 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m139.CNG.swc | ||
MMN12 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m140mod.CNG.swc | ||
MMN13 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m208mod.CNG.swc | ||
MMN14 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m210mod.CNG.swc | ||
MMN15 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m211mod.CNG.swc | ||
MMN16 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m215.CNG.swc | ||
MMN17 | Alpha Motoneuron (P3) | Experimental | Li et al. 2005 | ok_m216L.CNG.swc |
Links, Acknowledgments, and References:
When referring to this database, please quote (Ascoli et al., 2001) from this Philosophical Transaction of the Royal Society special issue.
This project is made possible in part by a
Human
Brain Project grant.
The database is hosted by the Krasnow
Institute for Advanced Study.
For more information, go to the L-Neuron
page.
Cannon's
Cvapp applet: to view, edit, zoom, rotate, etc. files in SWC format.
Southampton
Archive: for many experimental SWC files (mainly rat hippocampal
cells).
Cannon's
paper (Pubmed Abstract): describing the archive and the Cvapp
applet.
Experimental files of motoneuron
morphology
were kindly provided by Dr.
Burke's lab at the NIH.
The relative data is described and published
by Cullheim's et al., 1987 (Pubmed
Abstract)
Experimental files of Purkinje cell
morphology
were kindly provided by Dr.
Rapp at the Hebrew University.
The relative data is described and published
by Rapp et al., 1994 (Pubmed
Abstract).
Conversion routine: ana2swc.awk
(from Burke's format to SWC)
Conversion routine: nts2swc.awk
(from Eutectic to SWC)
Conversion routine: seg2swc.awk
(from ArborVitae raw ".seg" files to SWC)
Cover Art by
Giorgio
Ascoli and Stephen Senft.
This site was created and is maintained by
Giorgio
Ascoli (ascoli@gmu.edu).